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Seqera Cloud v24.2.0_cycle25

Feature updates and improvements​

Studios​

Launchpad​

  • Quick Launch now accepts pipelines that do not have a branch named master.
  • The new Launch Form now appears in Quick Launch and personal workspaces.

Compute environments​

  • Improved fetching of the cloud cost estimation for Google Cloud Platform's (GCP) spot instances.
  • ECS container timeout configuration is now set to 10 minutes by default (ECS_CONTAINER_CREATE_TIMEOUT=10m,ECS_CONTAINER_STOP_TIMEOUT=10m,ECS_MANIFEST_PULL_TIMEOUT=10m).

General​

  • Improved query times on some clean up job queries.
  • NF Launcher image is now pulled by default from cr.seqera.io public registry instead of quay.

Bug fixes​

Pipelines​

  • If the revision was not specified in Quick Launch, schemas did not fetch correctly.

Compute environments​

  • Retrieving managed identity IDs on updates resulted in the system displaying the incorrect managed identity.

Studios​

  • Start in new tab from the Data Studio form didn't navigate back the main tab to Data Studios page.

Wave v1.13.0

Feature updates and improvements​

Security scanning​

Conda​

Spack​

Registry​

API​

UI/UX​

Dependencies​

General​

Bug fixes​

Conda​

Registry​

Security scanning​

UI/UX​

General​

Breaking​

  • This version introduces some changes in build and jobs state metadata stored in Redis. Make sure no jobs are running while deploying this version.

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.12.4...v1.13.0

Nextflow 24.09.0-edge

Fusion​

  • Added Fusion version pinning info to Fusion config scope
  • Fixed Azure Fusion env misses credentials when no key or SAS provided

Wave​

  • Improved Wave build timeout handling

AWS Batch​

  • Added Platform workflow prefix in AWS Batch job names
  • Fixed AWS spot attempts with zero value

Configuration​

  • Fixed Inconsistency with camelCase and kebab-case config param
  • Included additional fields to manifest

General​

  • Added container tip in the task error report
  • Added support for Java 23
  • Fixed CI build taking only the commit msg header
  • Fixed XPath default de-serializer issue
  • Fixed failOnIgnore causes task monitor to stop submitting tasks
  • Fixed large mermaid diagrams
  • Removed mini from Flux submit command
  • Updated container handling with charliecloud
  • Updated Documentation structure
  • Updated nextflow install docs

Dependencies​

  • Bumped groovy 4.0.23 by @pditommaso in #5303
  • Bumped nf-wave@1.6.0 by @pditommaso in 179093d
  • Bumped nf-azure@1.10.0 by @pditommaso in 41d37fa
  • Bumped nf-amazon@2.9.0 by @pditommaso in e38980f

https://github.com/nextflow-io/nextflow/releases/tag/v24.09.0-edge

MultiQC v1.25.1

Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.

Fusion v2.4.4

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-arm64.json'.

Bugfix release to improve stability.

Feature updates and improvements​

Azure​

  • Azure: Preferred Nextflow-provided SAS token for authentication.

Configuration​

  • Defined a default exit code 174 on Fusion IO error.

Bug fixes​

General​

  • Fixed moved folders that contain subfolders and big files.
  • Fixed propagated truncating to zero to remote storage.
  • Fixed file moves overwriting files scheduled for upload.

Seqera Cloud v24.2.0_cycle24

Feature updates and improvements​

Studios​

  • Added direct Data Explorer browse link to mounted data items.
  • Made Studio details page tabs routable.

Data Explorer​

  • Highlight invalid custom datalinks.
  • Removed folder validation.

Compute environments​

  • Updated Azure service principal credentials.
  • Disabled AWS and Google Batch spot instance auto retry.

Workflows​

  • Patch workflow revision.

Launchpad​

  • Render Parameters UI correctly with new schemas based on 2020-12 draft.
  • Pipeline launch form: Delegate form creation to a form builder service.

API​

  • Updated 204 pipeline schema response description.

General​

  • Defined cache configuration once, only override changes.
  • Upgraded to Angular 16.

Bug fixes​

General​

  • Connection to Redis SSL server.
  • Terminated by Tower error.

API​

  • pairingId declaration in API schema.

Data Explorer​

  • Copying empty list for cloud data links.
  • Datalink status always null.

Launchpad​

  • Visual glitches in launch form.

Studios​

  • Updated last used field in compute environment when creating a data studio job.